Run
9199292

Run 9199292

Task 9910 (Supervised Classification) Bioresponse Uploaded 27-04-2018 by Hilde Weerts
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  • openml-python Sklearn_0.19.1. study_98
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Flow

sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeli ne.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hote ncoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn. feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble .forest.RandomForestClassifier))(1)Automatically created scikit-learn flow.
sklearn.preprocessing.data.OneHotEncoder(17)_categorical_features[]
sklearn.preprocessing.data.OneHotEncoder(17)_dtype{"oml-python:serialized_object": "type", "value": "np.float64"}
sklearn.preprocessing.data.OneHotEncoder(17)_handle_unknown"ignore"
sklearn.preprocessing.data.OneHotEncoder(17)_n_values"auto"
sklearn.preprocessing.data.OneHotEncoder(17)_sparsetrue
sklearn.feature_selection.variance_threshold.VarianceThreshold(11)_threshold0.0
sklearn.ensemble.forest.RandomForestClassifier(32)_bootstraptrue
sklearn.ensemble.forest.RandomForestClassifier(32)_class_weightnull
sklearn.ensemble.forest.RandomForestClassifier(32)_criterion"gini"
sklearn.ensemble.forest.RandomForestClassifier(32)_max_depthnull
sklearn.ensemble.forest.RandomForestClassifier(32)_max_features"auto"
sklearn.ensemble.forest.RandomForestClassifier(32)_max_leaf_nodesnull
sklearn.ensemble.forest.RandomForestClassifier(32)_min_impurity_decrease0.0
sklearn.ensemble.forest.RandomForestClassifier(32)_min_impurity_splitnull
sklearn.ensemble.forest.RandomForestClassifier(32)_min_samples_leaf1
sklearn.ensemble.forest.RandomForestClassifier(32)_min_samples_split2
sklearn.ensemble.forest.RandomForestClassifier(32)_min_weight_fraction_leaf0.0
sklearn.ensemble.forest.RandomForestClassifier(32)_n_estimators10
sklearn.ensemble.forest.RandomForestClassifier(32)_n_jobs1
sklearn.ensemble.forest.RandomForestClassifier(32)_oob_scorefalse
sklearn.ensemble.forest.RandomForestClassifier(32)_random_state2078
sklearn.ensemble.forest.RandomForestClassifier(32)_verbose0
sklearn.ensemble.forest.RandomForestClassifier(32)_warm_startfalse
sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier)(1)_memorynull
hyperimp.utils.preprocessing.ConditionalImputer(1)_axis0
hyperimp.utils.preprocessing.ConditionalImputer(1)_categorical_features[]
hyperimp.utils.preprocessing.ConditionalImputer(1)_copytrue
hyperimp.utils.preprocessing.ConditionalImputer(1)_fill_empty0
hyperimp.utils.preprocessing.ConditionalImputer(1)_missing_values"NaN"
hyperimp.utils.preprocessing.ConditionalImputer(1)_strategy"mean"
hyperimp.utils.preprocessing.ConditionalImputer(1)_strategy_nominal"most_frequent"
hyperimp.utils.preprocessing.ConditionalImputer(1)_verbose0
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_cv5
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_error_score"raise"
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_fit_paramsnull
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_iidtrue
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_n_iter100
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_n_jobs-1
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_param_distributions{"clf__bootstrap": [true, false], "clf__criterion": ["gini", "entropy"], "clf__max_features": {"oml-python:serialized_object": "rv_frozen", "value": {"dist": "scipy.stats._continuous_distns.uniform_gen", "a": 0.0, "b": 1.0, "args": [], "kwds": {"loc": 0, "scale": 1}}}, "clf__min_samples_leaf": {"oml-python:serialized_object": "rv_frozen", "value": {"dist": "scipy.stats._discrete_distns.randint_gen", "a": 1, "b": 20, "args": [], "kwds": {"low": 1, "high": 21}}}, "clf__min_samples_split": {"oml-python:serialized_object": "rv_frozen", "value": {"dist": "scipy.stats._discrete_distns.randint_gen", "a": 2, "b": 20, "args": [], "kwds": {"low": 2, "high": 21}}}, "clf__n_estimators": [300], "clf__random_state": {"oml-python:serialized_object": "rv_frozen", "value": {"dist": "scipy.stats._discrete_distns.randint_gen", "a": 1, "b": 100000, "args": [], "kwds": {"low": 1, "high": 100001}}}}
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_pre_dispatch"2*n_jobs"
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_random_state919306
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_refittrue
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_return_train_score"warn"
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_scoringnull
sklearn.model_selection._search.RandomizedSearchCV(estimator=sklearn.pipeline.Pipeline(imputation=hyperimp.utils.preprocessing.ConditionalImputer,hotencoding=sklearn.preprocessing.data.OneHotEncoder,variencethreshold=sklearn.feature_selection.variance_threshold.VarianceThreshold,clf=sklearn.ensemble.forest.RandomForestClassifier))(1)_verbose1

Result files

xml
Description

XML file describing the run, including user-defined evaluation measures.

arff
Predictions

ARFF file with instance-level predictions generated by the model.

arff
Trace

ARFF file with the trace of all hyperparameter settings tried during optimization, and their performance.

17 Evaluation measures

Area under ROC curve
0.8803 ± 0.017
Per class
Cross-validation details (10-fold Crossvalidation)
F measure
0.8083 ± 0.0165
Per class
Cross-validation details (10-fold Crossvalidation)
Kappa
0.6134 ± 0.0333
Cross-validation details (10-fold Crossvalidation)
KB relative information score
1715.2383 ± 9.0728
Cross-validation details (10-fold Crossvalidation)
Mean absolute error
0.2853 ± 0.0121
Cross-validation details (10-fold Crossvalidation)
Mean prior absolute error
0.4964 ± 0.0001
Cross-validation details (10-fold Crossvalidation)
Number of instances
3751
Per class
Cross-validation details (10-fold Crossvalidation)
Precision
0.8084 ± 0.0168
Per class
Cross-validation details (10-fold Crossvalidation)
Predictive accuracy
0.8086 ± 0.0165
Cross-validation details (10-fold Crossvalidation)
Prior entropy
0.9948
Cross-validation details (10-fold Crossvalidation)
Recall
0.8086 ± 0.0165
Per class
Cross-validation details (10-fold Crossvalidation)
Relative absolute error
0.5748 ± 0.0244
Cross-validation details (10-fold Crossvalidation)
Root mean prior squared error
0.4982 ± 0.0001
Cross-validation details (10-fold Crossvalidation)
Root mean squared error
0.3722 ± 0.0121
Cross-validation details (10-fold Crossvalidation)
Root relative squared error
0.747 ± 0.0244
Cross-validation details (10-fold Crossvalidation)