## Meta-Album Subcellular Human Protein Dataset (Extended)
*
This dataset is a subset of the Subcellular dataset in the Protein Atlas project(https://www.proteinatlas.org/). The original dataset, which stems from the Human Protein Atlas Image Classification Kaggle competition(https://www.kaggle.com/competitions/human-protein-atlas-image-classification), comprises 31 072 RGBY images of size 512x512 px, each of which belongs to one or more out of 28 classes. The labels correspond to protein organelle localizations. For Meta-Album, we performed two modifications: (1), to turn the dataset into a multi-class dataset, we dropped all images belonging to more than a single class and also those images that belong to classes with less than 40 members; (2) we converted the remaining images into RGB simply by dropping the yellow channel; this was also a common practice in the competition. Finally, and as for all datasets in Meta-Album, the images from the original dataset were resized to 128x128 image size.
### Dataset Details
Meta Album ID: MCR.PRT
Meta Album URL: [https://meta-album.github.io/datasets/PRT.html](https://meta-album.github.io/datasets/PRT.html)
Domain ID: MCR
Domain Name: Microscopy
Dataset ID: PRT
Dataset Name: Subcellular Human Protein
Short Description: Subcellular protein patterns in human cells
\# Classes: 21
\# Images: 15050
Keywords: human protein, subcellular
Data Format: images
Image size: 128x128
License (original data release): CC BY-SA 3.0
License URL(original data release): https://www.proteinatlas.org/about/licence
License (Meta-Album data release): CC BY-SA 3.0
License URL (Meta-Album data release): [https://www.proteinatlas.org/about/licence](https://www.proteinatlas.org/about/licence)
Source: The Human Protein Atlas
Source URL: https://proteinatlas.org
https://www.kaggle.com/c/human-protein-atlas-image-classification
Original Author: Peter J Thul, Lovisa Akesson, Mikaela Wiking, Diana Mahdessian, Aikaterini Geladaki, Hammou Ait Blal, Tove Alm, Anna Asplund, Lars Bjork, Lisa Breckels, and others
Original contact: contact@proteinatlas.org
Meta Album author: Felix Mohr
Created Date: 01 June 2022
Contact Name: Felix Mohr
Contact Email: meta-album@chalearn.org
Contact URL: [https://meta-album.github.io/](https://meta-album.github.io/)
### Cite this dataset
```
@article{thul2017subcellular,
title={A subcellular map of the human proteome},
author={Thul, Peter J and Akesson, Lovisa and Wiking, Mikaela and Mahdessian, Diana and Geladaki, Aikaterini and Ait Blal, Hammou and Alm, Tove and Asplund, Anna and Bjork, Lars and Breckels, Lisa M},
journal={Science},
volume={356},
number={6340},
year={2017},
publisher={American Association for the Advancement of Science}
}
```
### Cite Meta-Album
```
@inproceedings{meta-album-2022,
title={Meta-Album: Multi-domain Meta-Dataset for Few-Shot Image Classification},
author={Ullah, Ihsan and Carrion, Dustin and Escalera, Sergio and Guyon, Isabelle M and Huisman, Mike and Mohr, Felix and van Rijn, Jan N and Sun, Haozhe and Vanschoren, Joaquin and Vu, Phan Anh},
booktitle={Thirty-sixth Conference on Neural Information Processing Systems Datasets and Benchmarks Track},
url = {https://meta-album.github.io/},
year = {2022}
}
```
### More
For more information on the Meta-Album dataset, please see the [[NeurIPS 2022 paper]](https://meta-album.github.io/paper/Meta-Album.pdf)
For details on the dataset preprocessing, please see the [[supplementary materials]](https://openreview.net/attachment?id=70_Wx-dON3q&name=supplementary_material)
Supporting code can be found on our [[GitHub repo]](https://github.com/ihsaan-ullah/meta-album)
Meta-Album on Papers with Code [[Meta-Album]](https://paperswithcode.com/dataset/meta-album)
### Other versions of this dataset
[[Micro]](https://www.openml.org/d/44278) [[Mini]](https://www.openml.org/d/44308)