Data
QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396

QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396

deactivated ARFF Publicly available Visibility: public Uploaded 15-07-2016 by Noureddin Sadawi
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This dataset contains QSAR data (from ChEMBL version 17) showing activity values (unit is pseudo-pCI50) of several compounds on drug target ChEMBL_ID: CHEMBL3396 (TID: 12026), and it has 24 rows and 512 features (not including molecule IDs and class feature: molecule_id and pXC50). The features represent FCFP 1024-bit Molecular Fingerprints which were generated from SMILES strings. Feature selection was applied to this dataset. The fingerprints were obtained using the Pipeline Pilot program, Dassault Systèmes BIOVIA. Generating Fingerprints do not usually require missing value imputation as all bits are generated.

514 features

pXC50 (target)numeric12 unique values
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molecule_id (row identifier)nominal24 unique values
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FCFP4_1024b513numeric1 unique values
0 missing
FCFP4_1024b284numeric2 unique values
0 missing
FCFP4_1024b514numeric1 unique values
0 missing
FCFP4_1024b285numeric1 unique values
0 missing
FCFP4_1024b515numeric1 unique values
0 missing
FCFP4_1024b286numeric1 unique values
0 missing
FCFP4_1024b516numeric1 unique values
0 missing
FCFP4_1024b287numeric1 unique values
0 missing
FCFP4_1024b517numeric1 unique values
0 missing
FCFP4_1024b288numeric1 unique values
0 missing
FCFP4_1024b518numeric1 unique values
0 missing
FCFP4_1024b289numeric1 unique values
0 missing
FCFP4_1024b519numeric1 unique values
0 missing
FCFP4_1024b29numeric1 unique values
0 missing
FCFP4_1024b52numeric1 unique values
0 missing
FCFP4_1024b290numeric1 unique values
0 missing
FCFP4_1024b520numeric1 unique values
0 missing
FCFP4_1024b291numeric1 unique values
0 missing
FCFP4_1024b521numeric2 unique values
0 missing
FCFP4_1024b292numeric1 unique values
0 missing
FCFP4_1024b522numeric1 unique values
0 missing
FCFP4_1024b293numeric1 unique values
0 missing
FCFP4_1024b523numeric1 unique values
0 missing
FCFP4_1024b294numeric1 unique values
0 missing
FCFP4_1024b524numeric2 unique values
0 missing
FCFP4_1024b295numeric1 unique values
0 missing
FCFP4_1024b525numeric2 unique values
0 missing
FCFP4_1024b296numeric1 unique values
0 missing
FCFP4_1024b526numeric1 unique values
0 missing
FCFP4_1024b297numeric1 unique values
0 missing
FCFP4_1024b527numeric1 unique values
0 missing
FCFP4_1024b298numeric2 unique values
0 missing
FCFP4_1024b528numeric1 unique values
0 missing
FCFP4_1024b299numeric1 unique values
0 missing
FCFP4_1024b529numeric1 unique values
0 missing
FCFP4_1024b3numeric2 unique values
0 missing
FCFP4_1024b53numeric1 unique values
0 missing
FCFP4_1024b30numeric2 unique values
0 missing
FCFP4_1024b530numeric1 unique values
0 missing
FCFP4_1024b300numeric1 unique values
0 missing
FCFP4_1024b531numeric1 unique values
0 missing
FCFP4_1024b301numeric1 unique values
0 missing
FCFP4_1024b532numeric1 unique values
0 missing
FCFP4_1024b302numeric1 unique values
0 missing
FCFP4_1024b533numeric1 unique values
0 missing
FCFP4_1024b303numeric2 unique values
0 missing
FCFP4_1024b534numeric1 unique values
0 missing
FCFP4_1024b304numeric2 unique values
0 missing
FCFP4_1024b535numeric1 unique values
0 missing
Show first 100 features

62 properties

NumberOfInstances
24
Number of instances (rows) of the dataset.
NumberOfFeatures
514
Number of attributes (columns) of the dataset.
NumberOfClasses
0
Number of distinct values of the target attribute (if it is nominal).
NumberOfMissingValues
0
Number of missing values in the dataset.
NumberOfInstancesWithMissingValues
0
Number of instances with at least one value missing.
NumberOfNumericFeatures
513
Number of numeric attributes.
NumberOfSymbolicFeatures
1
Number of nominal attributes.
PercentageOfNumericFeatures
99.81
Percentage of numeric attributes.
Quartile3MeansOfNumericAtts
0
Third quartile of means among attributes of the numeric type.
MaxMutualInformation
Maximum mutual information between the nominal attributes and the target attribute.
MinNominalAttDistinctValues
The minimal number of distinct values among attributes of the nominal type.
PercentageOfSymbolicFeatures
0.19
Percentage of nominal attributes.
Quartile3MutualInformation
Third quartile of mutual information between the nominal attributes and the target attribute.
MaxNominalAttDistinctValues
The maximum number of distinct values among attributes of the nominal type.
MinSkewnessOfNumericAtts
-4.9
Minimum skewness among attributes of the numeric type.
Quartile1AttributeEntropy
First quartile of entropy among attributes.
Quartile3SkewnessOfNumericAtts
4.9
Third quartile of skewness among attributes of the numeric type.
MaxSkewnessOfNumericAtts
4.9
Maximum skewness among attributes of the numeric type.
MinStdDevOfNumericAtts
0
Minimum standard deviation of attributes of the numeric type.
Quartile1KurtosisOfNumericAtts
7.43
First quartile of kurtosis among attributes of the numeric type.
Quartile3StdDevOfNumericAtts
0
Third quartile of standard deviation of attributes of the numeric type.
MaxStdDevOfNumericAtts
0.5
Maximum standard deviation of attributes of the numeric type.
MinorityClassPercentage
Percentage of instances belonging to the least frequent class.
MinorityClassSize
Number of instances belonging to the least frequent class.
Quartile1MeansOfNumericAtts
0
First quartile of means among attributes of the numeric type.
StdvNominalAttDistinctValues
Standard deviation of the number of distinct values among attributes of the nominal type.
MeanAttributeEntropy
Average entropy of the attributes.
NumberOfBinaryFeatures
0
Number of binary attributes.
Quartile1MutualInformation
First quartile of mutual information between the nominal attributes and the target attribute.
MeanKurtosisOfNumericAtts
16.03
Mean kurtosis among attributes of the numeric type.
Quartile1SkewnessOfNumericAtts
1.53
First quartile of skewness among attributes of the numeric type.
MeanMeansOfNumericAtts
0.06
Mean of means among attributes of the numeric type.
Quartile1StdDevOfNumericAtts
0
First quartile of standard deviation of attributes of the numeric type.
AutoCorrelation
0.6
Average class difference between consecutive instances.
MeanMutualInformation
Average mutual information between the nominal attributes and the target attribute.
Quartile2AttributeEntropy
Second quartile (Median) of entropy among attributes.
ClassEntropy
Entropy of the target attribute values.
MeanNoiseToSignalRatio
An estimate of the amount of irrelevant information in the attributes regarding the class. Equals (MeanAttributeEntropy - MeanMutualInformation) divided by MeanMutualInformation.
Quartile2KurtosisOfNumericAtts
24
Second quartile (Median) of kurtosis among attributes of the numeric type.
Dimensionality
21.42
Number of attributes divided by the number of instances.
MeanNominalAttDistinctValues
Average number of distinct values among the attributes of the nominal type.
Quartile2MeansOfNumericAtts
0
Second quartile (Median) of means among attributes of the numeric type.
EquivalentNumberOfAtts
Number of attributes needed to optimally describe the class (under the assumption of independence among attributes). Equals ClassEntropy divided by MeanMutualInformation.
MeanSkewnessOfNumericAtts
2.76
Mean skewness among attributes of the numeric type.
Quartile2MutualInformation
Second quartile (Median) of mutual information between the nominal attributes and the target attribute.
MajorityClassPercentage
Percentage of instances belonging to the most frequent class.
MeanStdDevOfNumericAtts
0.05
Mean standard deviation of attributes of the numeric type.
Quartile2SkewnessOfNumericAtts
4.9
Second quartile (Median) of skewness among attributes of the numeric type.
MajorityClassSize
Number of instances belonging to the most frequent class.
MinAttributeEntropy
Minimal entropy among attributes.
PercentageOfBinaryFeatures
0
Percentage of binary attributes.
Quartile2StdDevOfNumericAtts
0
Second quartile (Median) of standard deviation of attributes of the numeric type.
MaxAttributeEntropy
Maximum entropy among attributes.
MinKurtosisOfNumericAtts
-2.05
Minimum kurtosis among attributes of the numeric type.
PercentageOfInstancesWithMissingValues
0
Percentage of instances having missing values.
Quartile3AttributeEntropy
Third quartile of entropy among attributes.
MaxKurtosisOfNumericAtts
24
Maximum kurtosis among attributes of the numeric type.
MinMeansOfNumericAtts
0
Minimum of means among attributes of the numeric type.
PercentageOfMissingValues
0
Percentage of missing values.
Quartile3KurtosisOfNumericAtts
24
Third quartile of kurtosis among attributes of the numeric type.
MaxMeansOfNumericAtts
4.48
Maximum of means among attributes of the numeric type.
MinMutualInformation
Minimal mutual information between the nominal attributes and the target attribute.
Show all 62 properties

12 tasks

Supervised Regression on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
1 runs - estimation_procedure: Custom 10-fold Crossvalidation - target_feature: pXC50
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Clustering on QSAR-DATASET-FOR-DRUG-TARGET-CHEMBL3396
0 runs - estimation_procedure: 50 times Clustering
Define a new task