Data
arcene

arcene

active ARFF Publicly available Visibility: public Uploaded 21-05-2015 by Rafael Gomes Mantovani
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Author: Source: UCI Please cite: ARCENE's task is to distinguish cancer versus normal patterns from mass-spectrometric data. This is a two-class classification problem with continuous input variables. This dataset is one of 5 datasets of the NIPS 2003 feature selection challenge. Source: a. Original owners The data were obtained from two sources: The National Cancer Institute (NCI) and the Eastern Virginia Medical School (EVMS). All the data consist of mass-spectra obtained with the SELDI technique. The samples include patients with cancer (ovarian or prostate cancer), and healthy or control patients. b. Donor of database This version of the database was prepared for the NIPS 2003 variable and feature selection benchmark by Isabelle Guyon, 955 Creston Road, Berkeley, CA 94708, USA (isabelle '@' clopinet.com). Data Set Information: ARCENE was obtained by merging three mass-spectrometry datasets to obtain enough training and test data for a benchmark. The original features indicate the abundance of proteins in human sera having a given mass value. Based on those features one must separate cancer patients from healthy patients. We added a number of distractor feature called 'probes' having no predictive power. The order of the features and patterns were randomized. This dataset is one of five datasets used in the NIPS 2003 feature selection challenge.

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V6168numeric10 unique values
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0 missing
V4633numeric131 unique values
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0 missing
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V5401numeric63 unique values
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0 missing
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0 missing
V6937numeric137 unique values
0 missing
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0 missing
V7449numeric32 unique values
0 missing
V7705numeric93 unique values
0 missing
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0 missing
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0 missing
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0 missing
V9241numeric112 unique values
0 missing
V9497numeric66 unique values
0 missing
V9753numeric80 unique values
0 missing
V26numeric135 unique values
0 missing
V282numeric34 unique values
0 missing
V538numeric155 unique values
0 missing
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0 missing
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0 missing
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0 missing
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0 missing
V1818numeric57 unique values
0 missing

107 properties

200
Number of instances (rows) of the dataset.
10001
Number of attributes (columns) of the dataset.
2
Number of distinct values of the target attribute (if it is nominal).
0
Number of missing values in the dataset.
0
Number of instances with at least one value missing.
10000
Number of numeric attributes.
1
Number of nominal attributes.
0.28
Kappa coefficient achieved by the landmarker weka.classifiers.trees.REPTree -L 3
0.14
Kappa coefficient achieved by the landmarker weka.classifiers.trees.DecisionStump
542.85
Maximum of means among attributes of the numeric type.
Minimal mutual information between the nominal attributes and the target attribute.
1.69
Second quartile (Median) of skewness among attributes of the numeric type.
0.64
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.RandomTree -depth 1
50.01
Number of attributes divided by the number of instances.
Maximum mutual information between the nominal attributes and the target attribute.
2
The minimal number of distinct values among attributes of the nominal type.
0.01
Percentage of binary attributes.
41.39
Second quartile (Median) of standard deviation of attributes of the numeric type.
0.35
Error rate achieved by the landmarker weka.classifiers.trees.RandomTree -depth 1
Number of attributes needed to optimally describe the class (under the assumption of independence among attributes). Equals ClassEntropy divided by MeanMutualInformation.
2
The maximum number of distinct values among attributes of the nominal type.
-1.92
Minimum skewness among attributes of the numeric type.
0
Percentage of instances having missing values.
Third quartile of entropy among attributes.
0.28
Kappa coefficient achieved by the landmarker weka.classifiers.trees.RandomTree -depth 1
0.64
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.J48 -C .00001
14.14
Maximum skewness among attributes of the numeric type.
0
Minimum standard deviation of attributes of the numeric type.
0
Percentage of missing values.
12.82
Third quartile of kurtosis among attributes of the numeric type.
0.44
Average class difference between consecutive instances.
0.64
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.RandomTree -depth 2
0.4
Error rate achieved by the landmarker weka.classifiers.trees.J48 -C .00001
315.39
Maximum standard deviation of attributes of the numeric type.
44
Percentage of instances belonging to the least frequent class.
99.99
Percentage of numeric attributes.
83.59
Third quartile of means among attributes of the numeric type.
0.65
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.DecisionStump -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.35
Error rate achieved by the landmarker weka.classifiers.trees.RandomTree -depth 2
0.19
Kappa coefficient achieved by the landmarker weka.classifiers.trees.J48 -C .00001
Average entropy of the attributes.
88
Number of instances belonging to the least frequent class.
0.01
Percentage of nominal attributes.
Third quartile of mutual information between the nominal attributes and the target attribute.
0.35
Error rate achieved by the landmarker weka.classifiers.trees.DecisionStump -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.28
Kappa coefficient achieved by the landmarker weka.classifiers.trees.RandomTree -depth 2
0.64
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.J48 -C .0001
14.2
Mean kurtosis among attributes of the numeric type.
0.7
Area Under the ROC Curve achieved by the landmarker weka.classifiers.bayes.NaiveBayes
First quartile of entropy among attributes.
3.23
Third quartile of skewness among attributes of the numeric type.
0.31
Kappa coefficient achieved by the landmarker weka.classifiers.trees.DecisionStump -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.64
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.RandomTree -depth 3
0.4
Error rate achieved by the landmarker weka.classifiers.trees.J48 -C .0001
71.07
Mean of means among attributes of the numeric type.
0.31
Error rate achieved by the landmarker weka.classifiers.bayes.NaiveBayes
-0.36
First quartile of kurtosis among attributes of the numeric type.
83.38
Third quartile of standard deviation of attributes of the numeric type.
0.65
Area Under the ROC Curve achieved by the landmarker weka.classifiers.bayes.NaiveBayes -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.35
Error rate achieved by the landmarker weka.classifiers.trees.RandomTree -depth 3
0.19
Kappa coefficient achieved by the landmarker weka.classifiers.trees.J48 -C .0001
Average mutual information between the nominal attributes and the target attribute.
0.38
Kappa coefficient achieved by the landmarker weka.classifiers.bayes.NaiveBayes
10.52
First quartile of means among attributes of the numeric type.
0.69
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.REPTree -L 1
0.35
Error rate achieved by the landmarker weka.classifiers.bayes.NaiveBayes -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.28
Kappa coefficient achieved by the landmarker weka.classifiers.trees.RandomTree -depth 3
0.64
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.J48 -C .001
An estimate of the amount of irrelevant information in the attributes regarding the class. Equals (MeanAttributeEntropy - MeanMutualInformation) divided by MeanMutualInformation.
1
Number of binary attributes.
First quartile of mutual information between the nominal attributes and the target attribute.
0.36
Error rate achieved by the landmarker weka.classifiers.trees.REPTree -L 1
0.31
Kappa coefficient achieved by the landmarker weka.classifiers.bayes.NaiveBayes -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.65
Area Under the ROC Curve achieved by the landmarker weka.classifiers.lazy.IBk -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0
Standard deviation of the number of distinct values among attributes of the nominal type.
0.4
Error rate achieved by the landmarker weka.classifiers.trees.J48 -C .001
2
Average number of distinct values among the attributes of the nominal type.
0.75
First quartile of skewness among attributes of the numeric type.
0.28
Kappa coefficient achieved by the landmarker weka.classifiers.trees.REPTree -L 1
0.35
Error rate achieved by the landmarker weka.classifiers.lazy.IBk -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.82
Area Under the ROC Curve achieved by the landmarker weka.classifiers.lazy.IBk
0.19
Kappa coefficient achieved by the landmarker weka.classifiers.trees.J48 -C .001
2.44
Mean skewness among attributes of the numeric type.
22.3
First quartile of standard deviation of attributes of the numeric type.
0.69
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.REPTree -L 2
0.31
Kappa coefficient achieved by the landmarker weka.classifiers.lazy.IBk -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.18
Error rate achieved by the landmarker weka.classifiers.lazy.IBk
56
Percentage of instances belonging to the most frequent class.
59.71
Mean standard deviation of attributes of the numeric type.
Second quartile (Median) of entropy among attributes.
0.36
Error rate achieved by the landmarker weka.classifiers.trees.REPTree -L 2
0.99
Entropy of the target attribute values.
0.64
Kappa coefficient achieved by the landmarker weka.classifiers.lazy.IBk
112
Number of instances belonging to the most frequent class.
Minimal entropy among attributes.
3.04
Second quartile (Median) of kurtosis among attributes of the numeric type.
0.28
Kappa coefficient achieved by the landmarker weka.classifiers.trees.REPTree -L 2
0.69
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.REPTree -L 3
0.58
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.DecisionStump
Maximum entropy among attributes.
-1.74
Minimum kurtosis among attributes of the numeric type.
30.93
Second quartile (Median) of means among attributes of the numeric type.
0.36
Error rate achieved by the landmarker weka.classifiers.trees.REPTree -L 3
0.45
Error rate achieved by the landmarker weka.classifiers.trees.DecisionStump
200
Maximum kurtosis among attributes of the numeric type.
0
Minimum of means among attributes of the numeric type.
Second quartile (Median) of mutual information between the nominal attributes and the target attribute.

14 tasks

17 runs - estimation_procedure: 10-fold Crossvalidation - evaluation_measure: predictive_accuracy - target_feature: Class
0 runs - estimation_procedure: 10-fold Crossvalidation - target_feature: Class
0 runs - estimation_procedure: 33% Holdout set - target_feature: Class
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
0 runs - estimation_procedure: 50 times Clustering
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