{ "data_id": "1245", "name": "lungcancer_shedden", "exact_name": "lungcancer_shedden", "version": 1, "version_label": null, "description": "**Author**: Kerby Shedden et al. \nMichel Lang \n**Source**: Unknown - Date unknown \n**Please cite**: Shedden, K., Taylor, J. M. G., Enkemann, S. A., Tsao, M. S., Yeatman, T. J., Gerald, W. L., \u2026 Sharma, A. (2008). Gene Expression-Based Survival Prediction in Lung Adenocarcinoma: A Multi-Site, Blinded Validation Study: Director\u2019s Challenge Consortium for the Molecular Classification of Lung Adenocarcinoma. Nature Medicine, 14(8), 822\u2013827. doi:10.1038\/nm.1790\n\nfRMA-normalized. Only \"Kratz-genes\"*.\n\n\\* (see: A practical molecular assay to predict survival in resected non-squamous, non-small-cell lung cancer: development and international validation studies\nKratz, Johannes R et al.\nThe Lancet , Volume 379 , Issue 9818 , 823 - 832)", "format": "ARFF", "uploader": "Dominik Kirchhoff", "uploader_id": 29, "visibility": "public", "creator": "\"Kerby Shedden et al.\"", "contributor": "\"Michel Lang\"", "date": "2015-02-19 18:30:04", "update_comment": null, "last_update": "2015-02-19 18:30:04", "licence": "Public", "status": "active", "error_message": null, "url": "https:\/\/www.openml.org\/data\/download\/552598\/phpl04K8a", "default_target_attribute": "OS_years", "row_id_attribute": null, "ignore_attribute": null, "runs": 3, "suggest": { "input": [ "lungcancer_shedden", "Michel Lang fRMA-normalized. Only \"Kratz-genes\"*. \\* (see: A practical molecular assay to predict survival in resected non-squamous, non-small-cell lung cancer: development and international validation studies Kratz, Johannes R et al. The Lancet , Volume 379 , Issue 9818 , 823 - 832) " ], "weight": 5 }, "qualities": { "NumberOfInstances": 442, "NumberOfFeatures": 24, "NumberOfClasses": 0, "NumberOfMissingValues": 0, "NumberOfInstancesWithMissingValues": 0, "NumberOfNumericFeatures": 21, "NumberOfSymbolicFeatures": 3, "REPTreeDepth3Kappa": null, "DecisionStumpKappa": null, "MaxMeansOfNumericAtts": 64.38914027149322, "MinMutualInformation": null, "Quartile2SkewnessOfNumericAtts": 0.639509315261686, "RandomTreeDepth1AUC": null, "Dimensionality": 0.05429864253393665, "MaxMutualInformation": null, "MinNominalAttDistinctValues": 1, "PercentageOfBinaryFeatures": 8.333333333333332, "Quartile2StdDevOfNumericAtts": 0.5203485786526885, "RandomTreeDepth1ErrRate": null, "EquivalentNumberOfAtts": null, "MaxNominalAttDistinctValues": 2, "MinSkewnessOfNumericAtts": -0.9849111832736618, "PercentageOfInstancesWithMissingValues": 0, "Quartile3AttributeEntropy": null, "RandomTreeDepth1Kappa": null, "J48.00001.AUC": null, "MaxSkewnessOfNumericAtts": 4.167465776555888, "MinStdDevOfNumericAtts": 0.1791545285532023, "PercentageOfMissingValues": 0, "Quartile3KurtosisOfNumericAtts": 2.925703515681698, "AutoCorrelation": -1.9765873015873034, "RandomTreeDepth2AUC": null, "J48.00001.ErrRate": null, "MaxStdDevOfNumericAtts": 10.092437602723125, "MinorityClassPercentage": null, "PercentageOfNumericFeatures": 87.5, "Quartile3MeansOfNumericAtts": 9.48668474155087, "CfsSubsetEval_DecisionStumpAUC": null, "RandomTreeDepth2ErrRate": null, "J48.00001.Kappa": null, "MeanAttributeEntropy": null, "MinorityClassSize": null, "PercentageOfSymbolicFeatures": 12.5, "Quartile3MutualInformation": null, "CfsSubsetEval_DecisionStumpErrRate": null, "RandomTreeDepth2Kappa": null, "J48.0001.AUC": null, "MeanKurtosisOfNumericAtts": 2.709454398278538, "NaiveBayesAUC": null, "Quartile1AttributeEntropy": null, "Quartile3SkewnessOfNumericAtts": 1.1910398473009653, "CfsSubsetEval_DecisionStumpKappa": null, "RandomTreeDepth3AUC": null, "J48.0001.ErrRate": null, "MeanMeansOfNumericAtts": 10.560130279172173, "NaiveBayesErrRate": null, "Quartile1KurtosisOfNumericAtts": 0.14591444375773643, "Quartile3StdDevOfNumericAtts": 0.6830141843222829, "CfsSubsetEval_NaiveBayesAUC": null, "RandomTreeDepth3ErrRate": null, "J48.0001.Kappa": null, "MeanMutualInformation": null, "NaiveBayesKappa": null, "Quartile1MeansOfNumericAtts": 6.047977195353471, "REPTreeDepth1AUC": null, "CfsSubsetEval_NaiveBayesErrRate": null, "RandomTreeDepth3Kappa": null, "J48.001.AUC": null, "MeanNoiseToSignalRatio": null, "NumberOfBinaryFeatures": 2, "Quartile1MutualInformation": null, "REPTreeDepth1ErrRate": null, "CfsSubsetEval_NaiveBayesKappa": null, "CfsSubsetEval_kNN1NAUC": null, "StdvNominalAttDistinctValues": 0.5773502691896257, "J48.001.ErrRate": null, "MeanNominalAttDistinctValues": 1.6666666666666667, "Quartile1SkewnessOfNumericAtts": -0.017399305421557362, "REPTreeDepth1Kappa": null, "CfsSubsetEval_kNN1NErrRate": null, "kNN1NAUC": null, "J48.001.Kappa": null, "MeanSkewnessOfNumericAtts": 0.7444475532585959, "Quartile1StdDevOfNumericAtts": 0.36126305400931025, "REPTreeDepth2AUC": null, "CfsSubsetEval_kNN1NKappa": null, "kNN1NErrRate": null, "MajorityClassPercentage": null, "MeanStdDevOfNumericAtts": 1.082594426324155, "Quartile2AttributeEntropy": null, "REPTreeDepth2ErrRate": null, "ClassEntropy": null, "kNN1NKappa": null, "MajorityClassSize": null, "MinAttributeEntropy": null, "Quartile2KurtosisOfNumericAtts": 0.9409518400582373, "REPTreeDepth2Kappa": null, "REPTreeDepth3AUC": null, "DecisionStumpAUC": null, "MaxAttributeEntropy": null, "MinKurtosisOfNumericAtts": -0.45692798321240513, "Quartile2MeansOfNumericAtts": 7.493890280426398, "REPTreeDepth3ErrRate": null, "DecisionStumpErrRate": null, "MaxKurtosisOfNumericAtts": 25.566474902565, "MinMeansOfNumericAtts": 4.3836915535444945, "Quartile2MutualInformation": null }, "tags": [ { "uploader": "38960", "tag": "Chemistry" }, { "uploader": "38960", "tag": "Life Science" } ], "features": [ { "name": "OS_years", "index": "0", "type": "numeric", "distinct": "332", "missing": "0", "target": "1", "min": "0", "max": "17", "mean": "4", "stdev": "3" }, { "name": "OS_event", "index": "1", "type": "nominal", "distinct": "2", "missing": "0", "distr": [] }, { "name": "histology", "index": "2", "type": "nominal", "distinct": "1", "missing": "0", "distr": [] }, { "name": "age", "index": "3", "type": "numeric", "distinct": "50", "missing": "0", "min": "33", "max": "87", "mean": "64", "stdev": "10" }, { "name": "sex", "index": "4", "type": "nominal", "distinct": "2", "missing": "0", "distr": [] }, { "name": "g_202387_at", "index": "5", "type": "numeric", "distinct": "442", "missing": "0", "min": "8", "max": "11", "mean": "9", "stdev": "1" }, { "name": "g_211475_s_at", "index": "6", "type": "numeric", "distinct": "442", "missing": "0", "min": "7", "max": "11", "mean": "9", "stdev": "1" }, { "name": "g_204531_s_at", "index": "7", "type": "numeric", "distinct": "442", "missing": "0", "min": "5", "max": "7", "mean": "6", "stdev": "0" }, { "name": "g_211851_x_at", "index": "8", "type": "numeric", "distinct": "442", "missing": "0", "min": "6", "max": "8", "mean": "7", "stdev": "0" }, { "name": "g_203967_at", "index": "9", "type": "numeric", "distinct": "442", "missing": "0", "min": "5", "max": "9", "mean": "6", "stdev": "1" }, { "name": "g_203968_s_at", "index": "10", "type": "numeric", "distinct": "442", "missing": "0", "min": "5", "max": "9", "mean": "6", "stdev": "1" }, { "name": "g_201938_at", "index": "11", "type": "numeric", "distinct": "442", "missing": "0", "min": "10", "max": "13", "mean": "11", "stdev": "0" }, { "name": "g_202454_s_at", "index": "12", "type": "numeric", "distinct": "442", "missing": "0", "min": "7", "max": "12", "mean": "10", "stdev": "1" }, { "name": "g_215638_at", "index": "13", "type": "numeric", "distinct": "442", "missing": "0", "min": "6", "max": "7", "mean": "6", "stdev": "0" }, { "name": "g_214088_s_at", "index": "14", "type": "numeric", "distinct": "442", "missing": "0", "min": "7", "max": "11", "mean": "8", "stdev": "1" }, { "name": "g_216010_x_at", "index": "15", "type": "numeric", "distinct": "442", "missing": "0", "min": "5", "max": "9", "mean": "6", "stdev": "1" }, { "name": "g_206924_at", "index": "16", "type": "numeric", "distinct": "442", "missing": "0", "min": "5", "max": "9", "mean": "5", "stdev": "0" }, { "name": "g_206926_s_at", "index": "17", "type": "numeric", "distinct": "442", "missing": "0", "min": "7", "max": "9", "mean": "7", "stdev": "0" }, { "name": "g_204890_s_at", "index": "18", "type": "numeric", "distinct": "442", "missing": "0", "min": "6", "max": "9", "mean": "7", "stdev": "1" }, { "name": "g_204891_s_at", "index": "19", "type": "numeric", "distinct": "442", "missing": "0", "min": "6", "max": "10", "mean": "8", "stdev": "1" }, { "name": "g_212724_at", "index": "20", "type": "numeric", "distinct": "442", "missing": "0", "min": "6", "max": "12", "mean": "9", "stdev": "1" }, { "name": "g_204979_s_at", "index": "21", "type": "numeric", "distinct": "442", "missing": "0", "min": "6", "max": "8", "mean": "6", "stdev": "0" }, { "name": "g_AFFX.HUMGAPDH.M33197_5_at", "index": "22", "type": "numeric", "distinct": "442", "missing": "0", "min": "10", "max": "14", "mean": "13", "stdev": "1" }, { "name": "g_AFFX.HUMGAPDH.M33197_M_at", "index": "23", "type": "numeric", "distinct": "442", "missing": "0", "min": "12", "max": "14", "mean": "13", "stdev": "0" } ], "nr_of_issues": 0, "nr_of_downvotes": 0, "nr_of_likes": 0, "nr_of_downloads": 0, "total_downloads": 0, "reach": 0, "reuse": 0, "impact_of_reuse": 0, "reach_of_reuse": 0, "impact": 0 }